Christopher J Creevey: search on Z-Library

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1

Polymorphism discovery and allele frequency estimation using high-throughput DNA sequencing of target-enriched pooled DNA samples

Michael P Mullen, Christopher J Creevey, Donagh P Berry, Matt S McCabe, David A Magee, Dawn J Howard, Aideen P Killeen, Stephen D Park, Paul A McGettigan, Matt C Lucy, David E MacHugh, Sinead M Waters

Journal:

Year:

2012

Language:

english

File:

PDF, 306 KB

english, 2012

2

Genome sequence ofEnsifer adhaerensOV14 provides insights into its ability as a novel vector for the genetic transformation of plant genomes

Rudder, Steven, Doohan, Fiona, Creevey, Christopher J, Wendt, Toni, Mullins, Ewen

Journal:

Year:

2014

Language:

english

File:

PDF, 821 KB

english, 2014

3

An ultra-high density genetic linkage map of perennial ryegrass ( Lolium perenne ) using genotyping by sequencing (GBS) based on a reference shotgun genome assembly

Velmurugan, Janaki, Mollison, Ewan, Barth, Susanne, Marshall, David, Milne, Linda, Creevey, Christopher J., Lynch, Bridget, Meally, Helena, McCabe, Matthew, Milbourne, Dan

Journal:

Annals of Botany

Year:

2016

Language:

english

File:

PDF, 988 KB

english, 2016

4

Diversity and Community Composition of Methanogenic Archaea in the Rumen of Scottish Upland Sheep Assessed by Different Methods

Snelling, Timothy J., Genç, Buğra, McKain, Nest, Watson, Mick, Waters, Sinéad M., Creevey, Christopher J., Wallace, R. John, White, Bryan A.

Journal:

Year:

2014

Language:

english

File:

PDF, 684 KB

english, 2014

5

Seeking to improve feed efficiency in pigs through microbial modulation via fecal microbiota transplantation in sows and dietary supplementation of offspring with inulin

McCormack, Ursula M., Curião, Tânia, Metzler-Zebeli, Barbara U., Wilkinson, Toby, Reyer, Henry, Crispie, Fiona, Cotter, Paul D., Creevey, Christopher J., Gardiner, Gillian E., Lawlor, Peadar G.

Journal:

Applied and Environmental Microbiology

Year:

2019

Language:

english

File:

PDF, 1.34 MB

english, 2019

6

Rumen Virus Populations: Technological Advances Enhancing Current Understanding

Gilbert, Rosalind A., Townsend, Eleanor M., Crew, Kathleen S., Hitch, Thomas C. A., Friedersdorff, Jessica C. A., Creevey, Christopher J., Pope, Phillip B., Ouwerkerk, Diane, Jameson, Eleanor

Journal:

Frontiers in Microbiology

Year:

2020

File:

PDF, 2.45 MB

2020

7

Effect of short term diet restriction on gene expression in the bovine hypothalamus using next generation RNA sequencing technology

Matthews, Daragh, Diskin, Michael G., Kenny, David A., Creevey, Christopher J., Keogh, Kate, Waters, Sinead M.

Journal:

Year:

2017

Language:

english

File:

PDF, 521 KB

english, 2017

8

An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences

Christopher J. Creevey, James O. McInerney

Journal:

Year:

2002

Language:

english

File:

PDF, 313 KB

english, 2002

9

Divergent functional isoforms drive niche specialisation for nutrient acquisition and use in rumen microbiome

Rubino, Francesco, Carberry, Ciara, Waters, Sinéad M, Kenny, David, McCabe, Matthew S, Creevey, Christopher J

Journal:

The ISME Journal

Year:

2017

Language:

english

File:

PDF, 70 KB

english, 2017

10

Can rumen bacteria communicate to each other?

Won, Mi-Young, Oyama, Linda B., Courtney, Stephen J., Creevey, Christopher J., Huws, Sharon A.

Journal:

Year:

2020

Language:

english

File:

PDF, 1.47 MB

english, 2020

11

Snpdat: Easy and rapid annotation of results fromde novosnp discovery projects for model and non-model organisms

Anthony G Doran, Christopher J Creevey

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 330 KB

english, 2013

12

Does a Tree-like Phylogeny Only Exist at the Tips in the Prokaryotes?

Christopher J. Creevey, David A. Fitzpatrick, Gayle K. Philip, Rhoda J. Kinsella, Mary J. O'Connell, Melissa M. Pentony, Simon A. Travers, Mark Wilkinson and James O. McInerney

Journal:

Proceedings Biological Sciences

Year:

2004

Language:

english

File:

PDF, 1.15 MB

english, 2004

13

Fecal Microbiota Transplantation in Gestating Sows and Neonatal Offspring Alters Lifetime Intestinal Microbiota and Growth in Offspring

McCormack, Ursula M., Curião, Tânia, Wilkinson, Toby, Metzler-Zebeli, Barbara U., Reyer, Henry, Ryan, Tomas, Calderon-Diaz, Julia A., Crispie, Fiona, Cotter, Paul D., Creevey, Christopher J., Gardiner

Journal:

Year:

2018

Language:

english

File:

PDF, 3.87 MB

english, 2018

14

Rumen Protozoa Play a Significant Role in Fungal Predation and Plant Carbohydrate Breakdown

Williams, Cate L., Thomas, Benjamin J., McEwan, Neil R., Rees Stevens, Pauline, Creevey, Christopher J., Huws, Sharon A.

Journal:

Frontiers in Microbiology

Year:

2020

File:

PDF, 2.86 MB

2020

15

Temporal dynamics of the metabolically active rumen bacteria colonising fresh perennial ryegrass

Huws, Sharon A., Edwards, Joan E., Creevey, Christopher J., Stevens, Pauline Rees, Lin, Wanchang, Girdwood, Susan E., Pachebat, Justin A., Kingston-Smith, Alison H.

Journal:

FEMS Microbiology Ecology

Year:

2015

Language:

english

File:

PDF, 806 KB

english, 2015

16

Changes in the Total Fecal Bacterial Population in Individual Horses Maintained on a Restricted Diet Over 6 Weeks

Dougal, Kirsty, Harris, Patricia A., Girdwood, Susan E., Creevey, Christopher J., Curtis, Gemma C., Barfoot, Clare F., Argo, Caroline M., Newbold, Charles J.

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 1.19 MB

english, 2017

17

Transcriptomics of liver and muscle in Holstein cows genetically divergent for fertility highlight differences in nutrient partitioning and inflammation processes

Moran, Bruce, Cummins, Sean B., Creevey, Christopher J., Butler, Stephen T.

Journal:

Year:

2016

Language:

english

File:

PDF, 703 KB

english, 2016

18

The Isolation and Genome Sequencing of Five Novel Bacteriophages From the Rumen Active Against Butyrivibrio fibrisolvens

Friedersdorff, Jessica C. A., Kingston-Smith, Alison H., Pachebat, Justin A., Cookson, Alan R., Rooke, David, Creevey, Christopher J.

Journal:

Frontiers in Microbiology

Year:

2020

File:

PDF, 2.31 MB

2020

19

Spherical: an iterative workflow for assembling metagenomic datasets

Hitch, Thomas C. A., Creevey, Christopher J.

Journal:

BMC Bioinformatics

Year:

2018

Language:

english

File:

PDF, 698 KB

english, 2018

20

CowPI: A Rumen Microbiome Focussed Version of the PICRUSt Functional Inference Software

Wilkinson, Toby J., Huws, Sharon A., Edwards, Joan E., Kingston-Smith, Alison H., Siu-Ting, Karen, Hughes, Martin, Rubino, Francesco, Friedersdorff, Maximillian, Creevey, Christopher J.

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 1.49 MB

english, 2018

21

On the complexity of haplotyping a microbial community

Nicholls, Samuel M, Aubrey, Wayne, De Grave, Kurt, Schietgat, Leander, Creevey, Christopher J, Clare, Amanda, Martelli, Pier Luigi

Journal:

Year:

2020

File:

PDF, 682 KB

2020

22

Metasecretome-selective phage display approach for mining the functional potential of a rumen microbial community

Ciric, Milica, Moon, Christina D, Leahy, Sinead C, Creevey, Christopher J, Altermann, Eric, Attwood, Graeme T, Rakonjac, Jasna, Gagic, Dragana

Journal:

Year:

2014

Language:

english

File:

PDF, 690 KB

english, 2014

23

Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

Thomas M Keane, Christopher J Creevey, Melissa M Pentony, Thomas J Naughton, James O Mclnerney

Journal:

BMC Evolutionary Biology

Year:

2006

Language:

english

File:

PDF, 379 KB

english, 2006

24

Global endometrial transcriptomic profiling: transient immune activation precedes tissue proliferation and repair in healthy beef cows

Foley, Cathriona, Chapwanya, Aspinas, Creevey, Christopher J, Narciandi, Fernando, Morris, Derek, Kenny, Elaine M, Cormican, Paul, Callanan, John J, O’Farrelly, Cliona, Meade, Kieran G

Journal:

Year:

2012

Language:

english

File:

PDF, 661 KB

english, 2012

25

Whole genome association study identifies regions of the bovine genome and biological pathways involved in carcass trait performance in Holstein-Friesian cattle

Doran, Anthony G, Berry, Donagh P, Creevey, Christopher J

Journal:

Year:

2014

Language:

english

File:

PDF, 861 KB

english, 2014

26

A Computational Screen for Type I Polyketide Synthases in Metagenomics Shotgun Data

Foerstner, Konrad U., Doerks, Tobias, Creevey, Christopher J., Doerks, Anja, Bork, Peer, Field, Dawn

Journal:

Year:

2008

Language:

english

File:

PDF, 306 KB

english, 2008

27

Can you see the wood for the trees?

Christopher J. Creevey

Journal:

Trends in Ecology & Evolution

Year:

2005

Language:

english

File:

PDF, 40 KB

english, 2005

28

Differential gene expression in the endometrium reveals cytoskeletal and immunological genes in lactating dairy cows genetically divergent for fertility traits

Moran, Bruce, Butler, Stephen T., Moore, Stephen G., MacHugh, David E., Creevey, Christopher J.

Journal:

Reproduction Fertility and Development

Year:

2015

Language:

english

File:

PDF, 560 KB

english, 2015

29

Gaia Data Release 2

Andrae, René, Fouesneau, Morgan, Creevey, Orlagh, Ordenovic, Christophe, Mary, Nicolas, Burlacu, Alexandru, Chaoul, Laurence, Jean-Antoine-Piccolo, Anne, Kordopatis, Georges, Korn, Andreas, Lebreton,

Journal:

Astronomy and Astrophysics

Year:

2018

Language:

english

File:

PDF, 20.46 MB

english, 2018

30

What lies beneath? Molecular evolution during the radiation of caecilian amphibians

Torres-Sánchez, María, Gower, David J., Alvarez-Ponce, David, Creevey, Christopher J., Wilkinson, Mark, San Mauro, Diego

Journal:

Year:

2019

File:

PDF, 3.44 MB

2019

31

L.U.St: a tool for approximated maximum likelihood supertree reconstruction

Wasiu A Akanni,Christopher J Creevey,Mark Wilkinson,Davide Pisani

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 233 KB

english, 2014

32

Deep sequence analysis reveals the ovine rumen as a reservoir of antibiotic resistance genes

Hitch, Thomas C.A., Thomas, Ben J., Friedersdorff, Jessica C.A., Ougham, Helen, Creevey, Christopher J.

Journal:

Environmental Pollution

Year:

2018

Language:

english

File:

PDF, 690 KB

english, 2018

33

Divergent functional isoforms drive niche specialisation for nutrient acquisition and use in rumen microbiome

Rubino, Francesco, Carberry, Ciara, M Waters, Sinéad, Kenny, David, McCabe, Matthew S, Creevey, Christopher J

Journal:

The ISME Journal

Year:

2017

Language:

english

File:

PDF, 1.35 MB

english, 2017

34

Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families

Torres-Sánchez, María, Creevey, Christopher J, Kornobis, Etienne, Gower, David J, Wilkinson, Mark, San Mauro, Diego, Kohara, Yuji

Journal:

Year:

2018

Language:

english

File:

PDF, 581 KB

english, 2018

35

Evidence of Positive Darwinian Selection in Putative Meningococcal Vaccine Antigens

David A. Fitzpatrick, Christopher J. Creevey, James O. McInerney

Journal:

Journal of Molecular Evolution

Year:

2005

Language:

english

File:

PDF, 389 KB

english, 2005

36

Mitochondrial data are not suitable for resolving placental mammal phylogeny

Morgan, Claire C., Creevey, Christopher J., O’Connell, Mary J.

Journal:

Mammalian Genome

Year:

2014

Language:

english

File:

PDF, 983 KB

english, 2014

37

Inadvertent paralog inclusion drives artefactual topologies and timetree estimates in phylogenomics.

Siu-Ting, Karen, Torres-Sánchez, María, San Mauro, Diego, Wilcockson, David, Wilkinson, Mark, Pisani, Davide, O’Connell, Mary J, Creevey, Christopher J, Battistuzzi, Fabia Ursula

Journal:

Molecular Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 537 KB

english, 2019

38

Implementing and testing Bayesian and maximum-likelihood supertree methods in phylogenetics

Akanni, Wasiu A., Wilkinson, Mark, Creevey, Christopher J., Foster, Peter G., Pisani, Davide

Journal:

Royal Society Open Science

Year:

2015

Language:

english

File:

PDF, 498 KB

english, 2015

39

What lies beneath? Molecular evolution during the radiation of caecilian amphibians

Torres-Sánchez, María, Gower, David J., Alvarez-Ponce, David, Creevey, Christopher J., Wilkinson, Mark, San Mauro, Diego

Journal:

Year:

2019

Language:

english

File:

PDF, 3.44 MB

english, 2019

40

Genomic and gene expression evidence of nonribosomal peptide and polyketide production among ruminal bacteria: a potential role in niche colonization?

Moreira, Sofia Magalhães, Mendes, Tiago Antônio de Oliveira, Santanta, Mateus Ferreira, Huws, Sharon A, Creevey, Christopher J, Mantovani, Hilário C

Journal:

FEMS Microbiology Ecology

Year:

2019

File:

PDF, 1.57 MB

2019

41

Identifying Single Copy Orthologs in Metazoa

Creevey, Christopher J., Muller, Jean, Doerks, Tobias, Thompson, Julie D., Arendt, Detlev, Bork, Peer, Siepel, Adam

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 1.40 MB

english, 2011

42

Determining the culturability of the rumen bacterial microbiome

Creevey, Christopher J., Kelly, William J., Henderson, Gemma, Leahy, Sinead C.

Journal:

Microbial Biotechnology

Year:

2014

Language:

english

File:

PDF, 1.42 MB

english, 2014

43

Insights into the skin of caecilian amphibians from gene expression profiles

Torres-SÃ¡nchez, MarÃa, Wilkinson, Mark, Gower, David J., Creevey, Christopher J., San Mauro, Diego

Journal:

Year:

2020

File:

PDF, 1.04 MB

2020

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